The Clone Wars Timeline
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Christophsis:
2.16 – Cat and Mouse (Precedes all other episodes, immediately followed by “1.16 – The Hidden Enemy” and the Feature Film; See notes for 3.07)
1.16 – The Hidden Enemy (See notes for 3.07)
1.00 – Feature Film (See notes for 3.07)

Malevolence:
1.02 – Rising Malevolence
1.03 – Shadow of Malevolence
1.04 – Destroy Malevolence

Domino Squad:
3.01 – Clone Cadets (Prequel to “1.05 – Rookies”)
1.05 – Rookies (See notes for 3.01 & 3.02)
3.02 – ARC Troopers (Sequel to “1.05 – Rookies,” first meeting of Grievous and Ventress)

Astromechs:
1.06 – Downfall of a Droid
1.07 – Duel of the Droids

Gunray/Grievous/Dooku:
1.08 – Bombad Jedi
1.09 – Cloak of Darkness
1.10 – Lair of Grievious
1.11 – Dooku Captured
1.12 – The Gungan General

Maridun:
1.13 – Jedi Crash
1.14 – Defenders of Peace

Pantora:
1.15 – Trespass
3.04 – Sphere of Influence (Before “2.15 – Senate Murders,” cameos from “2.17 – Bounty Hunters” characters)

Naboo:
1.17 – Blue Shadow Virus
1.18 – Mystery of a Thousand Moons

Ryloth/Toydaria Arc:
3.03 – Supply Lines (Prequel to “1.01 – Ambush,” and the Ryloth Trilogy “1.19 – 1.21″
1.01 – Ambush (See notes for 3.03)
1.19 – Storm Over Ryloth (See notes for 3.03)
1.20 – Innocents of Ryloth (See notes for 3.03)
1.21 – Liberty on Ryloth (See notes for 3.03)

Cad Bane:
2.01 – Holocron Heist (See notes for 3.08)
2.02 – Cargo of Doom
2.03 – Children of the Force

Geonosis:
2.04 – Senate Spy
2.05 – Landing at Point Rain
2.06 – Weapons Factory
2.07 – Legacy of Terror
2.08 – Brain Invaders

Grievous Redux:
2.09 – Grievous Intrigue
2.10 – The Deserter

Kurosawa Homage:
2.11 – Lightsaber Lost
2.17 – Bounty Hunters (See notes for 3.04)

Mandalore:
2.12 – The Mandalore Plot
2.13 – Voyage of Temptation
2.14 – Duchess of Mandalore
3.05 – Corruption
3.06 – The Academy

Zillo Beast:
2.18 – The Zillo Beast
2.19 – The Zillo Beast Strikes Back

Boba Fett & Aurra Sing:
2.20 – Death Trap (See notes for 3.07)
2.21 – R2 Come Home (See notes for 3.07)
2.22 – Lethal Trackdown (See notes for 3.07)

Ziro The Hutt:
3.07 – Assassin (The series begins … on Christophsis with “Cat and Mouse,” The Hidden Enemy,” and the Feature Film. Many Season One and Season Two episodes follow, with Season Two’s Boba Fett episodes introducing Aurra Sing … The Jedi mistakenly believe that Aurra is dead, until she surfaces in this episode, which brings back Ziro — chronologically — for the first time since his imprisonment. The story continues in the next Season Three episode, “Evil Plans”, and Aurra will somehow be freed from captivity in time for Cad Bane’s attack on the Senate in Season One’s “Hostage Crisis.” The drama surrounding Ziro and his freedom then picks up in “Hunt for Ziro,” the ninth episode of this season.)
3.08 – Evil Plans (After “2.01 – Holocron Heist,” immediately before “1.22 – Hostage Crisis”, some time before “2.15 – Senate Murders”)
1.22 – Hostage Crisis (See notes for 3.07 & 3.08)
3.09 – Hunt For Ziro

Senate:
3.10 - Heroes on Both Sides (With the start of this arc, which continues in "Pursuit of Peace" and
concludes in Season Two's "Senate Murders," the Clone Wars storyline advances to its
furthest point in the timeline ... Season Two's "Senate Murders" is actually, to date, the lastepisode in the chronology)
2.15 – Senate Murders (See notes for 3.04, 3.08 & 3.10)